Hello ! 
I would like to put some guitar riffs into ZynSeq, and then Mic, Bass… Well, audio inputs.
I understand that I can record those riffs, but then is there a tool (or instrument) where I can associate one riff to a midi note so I can trigger it within the pattern editor ?
Zynsampler does that. Or you can use v1sampler.
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Really ? 0_O
ZynSampler User Guide - ZynthianWiki 
I’ve used it with “pitch midi trigger” is your solution involve “splicing” and merging all the audio file with a software out of Zynthian?
(I have to take a look at v1sampler, I don’t remember if I’ve used it yet)